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Skip Navigation LinksHome > ChemBioDraw Ultra 14 Perpetual Named User Win
ChemBioDraw Ultra 14 Suite

ChemBioDraw Ultra 14 Suite

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by PerkinElmer Informatics | Media: Download

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The Scientifically Intelligent Drawing Suite for Chemists and Biologists

The ChemBioDraw® Ultra 14.0 suite provides scientists with an up-to-date collection of scientifically intelligent applications for chemical structure drawing and analysis combined with biological pathway drawing.

ChemBioDraw® Ultra 14.0 is the industry standard structure drawing suite for the serious professional to draw accurate, chemically-aware structures for use in database queries (including direct searching in SciFinder), preparation of publication-quality graphics, and entry for modeling and other programs that require an electronic description of molecules and reactions as well as advanced prediction tools and full Web integration using the ChemDraw ActiveX/Plugin.

ChemBioDraw® Ultra 14.0 also provides a drawing tool for biological pathways. It includes common pathway elements (membranes, DNA, enzymes, receptors, etc.) as well as the ability to import other elements. One of the advantages over alternative pathway drawing tools is the integrated power of ChemDraw's chemical intelligence. ChemBioDraw Ultra is the gold standard for chemical and biological drawing, publication, and query preparation.

ChemBioDraw Ultra Windows includes ChemBioDraw Ultra, ChemBio3D Pro(W), and ChemBioFinder Ultra(W). It also features ChemDraw for Excel(W), ChemDraw ActiveX plug-in, and Name=Struct.

"(W = Windows Only)"

ChemBioDraw® Ultra 14.0 Suite Highlights in Version 14.0

  • Search SciFinder direct from ChemBioDraw Ultra with no time-consuming cutting and pasting.
  • Copy and paste CDXML and molfile text to and from the clipboard for data exchange with other applications that can consume these file formats.
  • Biopolymer toolbar with disulfide and lactam bridges, beta and D-amino acids, DNA, RNA, protecting groups and linkers
  • Paste peptide, DNA and RNA sequences and have them interpreted chemically with sequence wrapping and shaping
  • Gel Electrophoresis Plate Tool provides arbitrary rotation for lane labels, drag and position band labels, paste data from Excel or other sources, and copy and paste between lanes
  • Calculators for pKa, LogP and LogS enable scientists to explore important bioavailability properties such acid dissociation, distribution and aqueous solubility for putative compounds

For more information on all of the applications that are included in the ChemBioDraw Ultra suite, please see the Applications tab below.


Screenshots
Applications
      ChemBioDraw Ultra

      This ultimate chemistry and biology drawing application delivers all of the industry leading drawing, publishing and analytical features in ChemDraw, including direct searching in SciFinder, combined with the biology features in BioDraw, providing a complete solution for chemical structure drawing and analysis combined with biological pathway drawing.

      ChemBioDraw Ultra now includes a direct link to search SciFinder. Chemical structure analysis tools include 13C and 1H NMR prediction with peak splitting and highlighting and choice of solvent, Struct=Name, ChemDraw/Excel, stoichiometric analysis, property predictions including pKa*, LogP and LogS* live-linked to the structure, a live-linked Database Gateway, fragmentation tools, TLC and Gel Electrophoresis plate drawing tools, and 3D structures live-linked to the 2D structure.

      ChemBioDraw also offers customization options for Nicknames, Templates, and HotKeys. The biopolymer toolbar enables creation of peptide, DNA and RNA sequences, including beta and D-amino acids, disulfide and lactam bridges and linkers and protecting groups. Biological pathway drawing elements include membranes, DNA, enzymes, receptors, and reaction arrows. tRNA, Ribosomes, Helix Proteins, Golgi Bodies, G-Proteins, Immunoglobins, Mitochondrion, new Freehand Pen Tool, Annotation, and a Plasmid mapping tool are also included.

      * Windows only.

      Struct=Name Pro
      Struct=Name contains the leading comprehensive methods for converting chemical structures into IUPAC chemical names and names to structures. It can be used for many types of compounds, including charged compounds and salts, bridged and fused ring systems, highly symmetric structures, isotopically labeled compounds and many other types of inorganic and organometallics.
      ChemDraw/Excel Pro
      ChemDraw/Excel allows scientists to create chemically intelligent spreadsheets within the familiar Microsoft Excel environment. Build and manipulate chemical structures within Excel, compute chemical properties and use structure and substructure searches to locate and group compounds.

      * Windows Only

      ChemNMR Pro
      ChemNMR can be used to accurately estimate 13C and 1H (proton) NMR chemical shifts. The molecule and the spectrum appear in a new window. The chemical shifts are displayed on the molecule and the spectrum is linked to the structure so that clicking on a peak in the spectrum highlights the related fragment on the molecule. With ChemNMR 13.0, the solvent can be specified as DMSO or CDCl3
      BioDraw Ultra
      BioDraw Ultra makes drawing and annotating biological pathways quick and straightforward, adding an unmatched level of uniformity and detail. Drawing elements include membranes, DNA, enzymes, receptors, and reaction arrows, tRNA, Ribosomes, Helix Proteins, Golgi Bodies, G-Proteins, Immunoglobins, Mitochondrion and a Plasmid Map Tool. BioDraw Ultra now includes a biopolymer toolbar for drawing and editing peptide and nucleotide sequences using single and three letter codes, including beta and D-amino acids. The sequences can be expanded and contracted and sulfide and lactam bridges can be easily added.
      MestRe Nova Std/Lite
      MestRe Nova (MNova) Std is a 1D only application for data processing, visualization and analysis of NMR data. The program provides a variety of conversion facilities for most NMR spectrometer formats and includes the conventional processing, displaying and plotting capabilities of an NMR program, and more advanced processing techniques. MNova Std/Lite is a 1D only version of MNova which offers the user basic processing and analysis capabilities. The full version of MNova is available through the SciStore online store or directly through Mestrelab Research.
      Chem3D Pro
      This premier application for desktop molecular modeling and protein visualization provides support for state-of-the-art open GL graphics and stereo hardware. Build small molecules using the ChemDraw interface and see the 3D structure appear simultaneously, perform basic Molecular modeling computations such as Dihedral driver MM2 experiments, Molecular Mechanics and Dynamics. Perform ab initio calculations with an interface to GAMESS.

      * Windows Only

      ChemBioFinder Ultra
      ChemBioFinder Ultra is the ultimate database management system for chemical structure and information databases. Browse, create, search, and update local databases with structural, numeric, and text data via user-customizable forms, including structural, sub-structural, and similarity queries, as well as linking to related data in sub-forms. Calculate values for physical properties, view and edit structures in a variety of modes, automatically create databases and forms for imported data, export and print. Easily manage saved queries, access favorite databases, and view database structure via the dockable Explorer Window. Features include the ability to perform RGroup Analysis, read graphic files from the database, Python programming and improved tautomeric searching.

      * Windows Only

      ChemBioFinder for Office
      ChemBioFinder for Office locates and searches structure files contained in documents on your computer or network drives. Multiple structure file types are recognized, including cdx, mol, sdf, rxn and skc, and search results can be displayed or exported as SDfiles.

      * Windows Only

      ChemBioViz Pro

      ChemBioViz Pro is a rich toolkit for visualizing numeric data in ChemBioFinder. Calculate and display structure activity relationships, clustering relationships, and statistical data, including histograms, scatter, logarithmic plots, and dendrograms. Descriptive statistics include minimum, maximum, mean, median, standard deviation and more. Create Compound Profiles and visually compare and rank structures based on values of selected properties and the cost profile associated with each property. Create plots within ChemBioFinder sub-forms.

      ChemBioViz is a visualization application which works with ChemBioFinder Ultra and allows users to correlate biological activity with chemical structures. ChemBioViz transforms ChemBioFinder data into easy to understand graphics, allowing scientists to easily discern structure-activity relationships. ChemBioViz generates an interactive window containing a variety of plot types and allows researchers to analyze data using a variety of statistical analytical tools. Users can then filter their data on any field in the database in order to examine subsets of data in order to locate trends and correlations.

      * Windows Only

      ChemDraw ActiveX/Plugin Pro 14
      This premier ActiveX Control/Plugin allows querying online chemical databases and viewing and publishing online structures. This installer automatically installs the necessary Plugin or ActiveX controls based on the web browser(s).
Databases
Features
      ChemBioDraw Ultra
      ActiveX Edit in ChemDraw
      Edit your document using your installed version of ChemDraw, rather than your ActiveX, providing greater screen real estate for editing, and also access to the full range of ChemDraw capabilities.
      Arrows Tool
      Control every aspect of arrows drawn, including arc, length, headstyle, dipole, no-go and more.
      BioDraw
      Draw biological pathways with common pathway elements such as membranes, DNA, enzymes, receptors, and reaction arrows. tRNA, Ribosomes, Helix Proteins, Golgi Bodies, G-Proteins, Immunoglobins, Mitochondrion and more!
      Biopolymer Toolbar
      Draw peptides and nucleotide (DNA, RNA) sequences using 1- and 3- letter codes. Includes natural L-, unnatural D- and beta amino acids. Simply switch between 1- and 3- letter codes and expand and contract labels. Insert linking and protecting groups with simple type-ahead functionality. Use the bond tool to create disulfide and lactam bridges, and cyclic peptides.
      Chain Tools
      Draw both acyclic and snaking chains.
      ChemBio3D HotLink
      (W) See what structures look like in 3D in a floating window and open Chem3D with a single click from within ChemDraw.
      Chemical File Format
      Reading & writing of chemical file formats including skc, mol v3000, sdf, spectra & reactions.
      Chemical Warnings
      Mouse-over red box to read error description.
      ChemNMR Solvent Selection
      Users can now select whether they want the spectrum predicted in CDCl3 or DMSO.
      ChemNMR User Proton Shift Database
      Users can add their own shift correction data for proton prediction which can supplement the existing data used by the ChemNMR algorithm.
      ChemProp
      (W) Advanced property parameter including BP, MP and more.
      CLogP
      CLogP/CMR provides the latest methodology for calculationg n-octanol/water partition coefficients and molar refractivity.
      Custom Templates & Nicknames
      Ability to create & edit templates & nicknames.
      Database HotLink
      Search PerkinElmer Informatics databases for chemical structures in real time as you draw.
      Expand Generic Structure
      Generate multiple structures from an "abbreviated" generic structure.
      Floating Character Map
      Add special characters from any font instantly to any ChemDraw document.
      Floating Periodic Table
      Element information available at all times with floating periodic table on the desktop.
      Freehand Drawing Tool
      Use the mouse or other pointing device to draw freehand shapes using this intuitive drawing tool.
      Gel Electrophoresis Plate Tool
      Draw gel electrophoresis plates. This new tool is similar to TLC Plate Tool, and provides arbitrary rotation for lane labels, drag and position band labels, paste data from Excel or other sources, and copy and paste between lanes.
      High Color Documents and Templates
      Documents can contain over 16 million colors. Create high color pathway and element templates.
      I/Draw Mode
      New compatibility mode allows ChemDraw to look and feel like your legacy drawing package.
      ISIS-style Data SGroups
      Data can be attached to objects.
      LabArt
      Publication-quality EPS glassware art for use within your ChemDraw documents.
      LogP
      Calculate the logarithmic value of the n-octanol/water partition coefficient.
      LogS
      Calculate the logarithmic value of the aqueous solubility S of a compound. This value significantly affects its absorption and distribution characteristics.
      Mass & Other Fragmentation Tools
      Three fragmentation tools: Mass, Dissociation, & Retrosynthesis.
      MS Office Integration
      (W) ChemDraw offers full integration via OLE, so you can embed your drawings in any Office document.
      Multi-Page Docs
      Create multiple page documents and posters within a single ChemDraw file.
      Name=Struct
      Produce structures from systematic and common chemical structure names, and generate systematic IUPAC names from structures. Works for many types of compounds, including charged compounds and salts, isotopically labeled compounds, highly symmetric structures and many other types of organic, inorganic and organometallics.
      Online Menu
      (W) Draw a structure or model and immediately get online vendor information ChemACX.Com with the click of a button.
      Paste Sequences
      Paste sequences in FASTA format. Copy a text string describing a biopolymer as a series of single or multi letter residues, with valid separators (space, tab, dash), and paste it as a sequence with full chemistry.
      pKa
      Calculate the logarithmic value of the acid dissociation constant Ka, which is a quantitative measure of the strength of an acid in solution.
      Plasmid Map Tool
      Create a plasmid map entering the number of base pairs in the plasmid map and specifying ranges for regions and locations and labels for markers.
      Polymer Draw
      Represent and manipulate polymers in ChemDraw.
      Properties HotLink
      Chemical names, formulas, molecular weights, and other physical properties added to the document are “live”, and will now update automatically as modifications are made to structural diagrams.
      Relative Stereochemistry
      Allows specification of relationships between groups of stereocenters smaller than an entire molecule.
      Rotation about Arbitrary Centers
      Change the center of rotation using adjustment handle on the Lasso and Marquee tools. Rotation will now be centered on the selected origin.
      Save to Dropbox
      Use Cloud storage via Dropbox to save, share and import ChemBio3D models in a secure but sharable Cloud location.
      Sequence Tool
      Draw peptide or nucleotide sequences using using 1 and 3 letter codes. The atoms are labeled with amino acid or nucleotide nicknames. The sequences can be expanded and contracted.
      Stereochemistry
      Identifies stereocenters using Cahn-Ingold Prelog rules.
      Stoichiometry Grid
      Automatically track and update stoichiometry data for any user-defined chemical reaction.
      Structure CleanUp
      Improves poor drawings.
      Structure Perspective Tool
      Adjust the perspective of ChemDraw molecules with simple horizontal/vertical mouse movements.
      TLC Plate Tool
      Draw thin layer chromatography plates. Drag plate to size and drag spots to required positions. Shape and color spots and set or display Rf values.
      tPSA
      Topological Polar Surface Area (tPSA) provides a fast approximation of the molecular polar surface area, a useful parameter for prediction of drug transport properties, which has been show to correlate with human intestinal absorption and blood-brain barrier penetration.
      Chem3D Pro
      ChemProp
      (W) Advanced property parameter including BP, MP and more.
      Dihedral Driver
      (W) New conformational analysis tool allows the generation of MM2 energy plots.
      Enhanced Graphics
      (W) Chem3D uses openGL to provide high quality graphics display.
      Group Labels
      (W) Display group labels in the Chem3D model view.
      Hydrogen Bonds
      (W) Automatically display hydrogen bonds in the 3D view!
      Kekule / Delocalized Display Mode
      (W) Toggle between dashed line and alternating single-double bond representation of delocalized and aromatic bonds.
      MM2
      (W) Built in support for MM2 to generate realistic 3D structures.
      Model Explorer
      (W) Hierarchical tree-control for exploring the structure of large models. Import a PDB file and examine chains, groups, and ligands. This new feature gives fine-grained control.
      Molecular Modeling & Dynamics
      (W) Workstation quality molecular modeling.
      PowerPoint
      (W) Embed Chem3D models in PowerPoint files. Rotate and zoom Chem3D models while giving a presentation.
      Spectrum Viewer
      (W) Display spectral calculation results from Gaussian and GAMESS as a graphical display in a separate window.
      ChemBioFinder Ultra
      3D Query/Finder
      (W) Query ChemFinder database by 3D parameter.
      ActiveX Control Boxes
      (W) Include third party ActiveX controls on your form.
      Automatic Form Generation
      (W) Automatically build or extend databases by importing structures from collections of structure files, databases, SDFiles, or other sources.
      ChemBioFinder/Office
      (W) Search on your computer or network for chemical structures in Word, Excel, Powerpoint, ChemDraw, ISIS files and more, and browse, search, refine, or export your hit list to any destination.
      BioViz
      (W) The bio visualization add-on to ChemBioFinder allows you to create graphical representations of ChemBioFinder databases in order to identify trends and correlations within subsets of your data.
      Chemical Searching
      (W) Search for (sub)structure, similarity, numeric values, text, chemical formula (including element ranges, element exclusions), date. Support for tautomers and alt groups.
      Clustering Analysis
      Discover similarities within sets of compounds and properties.
      Compound Profiles
      (W) Visually compare and rank structures based on values of selected properties and the cost profile associated with each property.
      Hit List and Query Management
      (W) Use a navigation tree to track history of searches between sessions, allow queries to be rerun or reconstituted; merge lists by drag-and-drop in tree. Queries color-coded to relate to ChemBioViz plots.
      List Merge
      (W) Merge hitlists with any logic: intersect, union, subtract, reverse subtract.
      Multiple Data Views
      (W) View records one at a time, in a table view or a multiform view.
      Plotting
      (W) Plot one or two variables with a variety of plotting options. Hover over a point to view the corresponding chemical structure. Filter displayed points by any numeric variable using a slider control.
      Plotting: Statistical Analysis and Customization
      (W) Perform statistical analyses and display the results on the plot, modify the shape and color of plot points, add comment boxes, change axis label text and background color.
      Plotting: Subform Plots
      (W) Include miniature plots inside subform boxes for quick visualization of subform data on a per-compound basis.
      Property Generation
      (W) Generate many types of physical property; populate database fields automatically or generate on-the-fly per record.
      Python Scripting
      Python scripts can be written to automate the application and can be attached to buttons on the form or to database trigger events. User the enhanced Script Editor to develop and debug -- now featuring interactive line-by-line execution -- and display output in a new dockable text window.
      Scripting
      (W) Python scripts can be written to automate the application and can be attached to buttons on the form or to database trigger events. User the enhanced Script Editor to develop and debug -- now featuring interactive line-by-line execution -- and display output in a new dockable text window. CAL is a simple programming language, accessible to non-programmers allows automation, self-running demos, custom operations; includes debugging features.
      Standardized Handling of Implict Hydrogens
      Conforms to industry standards.
      Subforms
      (W) Link relational data to your main table via subforms.
      Tabbed Forms
      (W) Partition a form into sections using tabbed form pages.
      ChemDraw/Excel Pro
      ChemDraw/Excel
      (W) Use Excel to organize and analyze your chemical data.
      Name>Struct/Excel
      (W) Generate a ChemDraw structure in MS Excel by typing in systematic chemical names for most substances.
      BioDraw Ultra
      Arrows Tool
      Control every aspect of arrows drawn, including arc, length, headstyle, dipole, no-go and more.
      Chain Tools
      Draw both acyclic and snaking chains.
      Chemical Warnings
      Mouse-over red box to read error description.
      Expand Generic Structure
      Generate multiple structures from an "abbreviated" generic structure.
      Floating Character Map
      Add special characters from any font instantly to any ChemDraw document.
      Floating Periodic Table
      Element information available at all times with floating periodic table on the desktop.
      Freehand Drawing Tool
      Use the mouse or other pointing device to draw freehand shapes using this intuitive drawing tool.
      High Color Templates
      A set of high color pathway and element templates.
      Mass & Other Fragmentation Tools
      Three fragmentation tools: Mass, Dissociation, & Retrosynthesis.
      MS Office Integration
      (W) ChemDraw offers full integration via OLE, so you can embed your drawings in any Office document.
      Plasmid Map Tool
      Create a plasmid map entering the number of base pairs in the plasmid map and specifying ranges for regions and locations and labels for markers.
      Polymer Draw
      Represent and manipulate polymers in ChemDraw.
      Properties HotLink
      Chemical names, formulas, molecular weights, and other physical properties added to the document are “live”, and will now update automatically as modifications are made to structural diagrams.
      Relative Stereochemistry
      Allows specification of relationships between groups of stereocenters smaller than an entire molecule.
      Sequence Tool
      Draw peptide or nucleotide sequences using using 1 and 3 letter codes. The atoms are labeled with amino acid or nucleotide nicknames. The sequences can be expanded and contracted.
      Stereochemistry
      Identifies stereocenters using Cahn-Ingold Prelog rules.
      Structure CleanUp
      Improves poor drawings.
      Structure Perspective Tool
      Adjust the perspective of ChemDraw molecules with simple horizontal/vertical mouse movements.
      TLC Plate Tool
      Draw thin layer chromatography plates. Drag plate to size and drag spots to required positions. Shape and color spots and set or display Rf values.
      ChemNMR Pro
      ChemNMR
      Predict Proton NMR spectra with splitting patterns. Also predict Carbon-13 NMR spectra. Spectra and peaks are linked to the structure for clear interpretation. Add your own shift correction data for proton prediction which can supplement the existing data used by the ChemNMR algorithm.
      ChemNMR User Proton Shift Database
      Users can add their own shift correction data for proton prediction which can supplement the existing data used by the ChemNMR algorithm.
      Struct=Name Pro
      Name>Struct
      Produce structures from systematic and common chemical structure names. It can be used for many types of compounds, including charged compounds and salts, highly symmetric structures and many other types of organic, inorganic and organometallics.
      Struct>Name
      Produce names for many more types of compounds, including charged compounds and salts, highly symmetric structures, many types of inorganic and organometallic compounds, and others.
      MestRe Nova Std/Lite
      1D NMR Processing
      Process and analyze 1D NMR FID (free induction decay) files.

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